In my opinion, not exactly the same.
1. You indicate that you used your own fax server which is connected to POTS lines. While your internal network may not be stressed and you may have more than enough internal resources to handle, this does not take into account how the external network handled. The implication here is that upi went from an analog signal (POTS) to a T1 inteface (digital). The other poster indicated "The PDF attachment isn't missing data, the result I get is that the last page received has the appearance of being physically cut, as in it may be significantly shorter than 11", where the source most definitely was not. The source TIFFs in the folder on the server look the same". He indicated that data is not missing just that the last page is apparently not getting processed correctly. You seem to be indicating that faxes fail which implies loss of data requiring a or mutiple resends. Regardless of the interpretation, you do seem to have a problem.
I don't have a PRI and therefore may not be of much help. I use SIP and have good success receiving,,,,,,,,most of the time. In any event, I did come across this which may or may not help:
http://www.voipsupply.com/blog/voip-faxing-with-the-sangoma-fax-sync-cable